PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00073166001
Common NameGSBRNA2T00073166001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 367aa    MW: 40147.3 Da    PI: 9.1429
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00073166001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.47.4e-3977137262
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                          ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+ s
  GSBRNA2T00073166001  77 PQEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGTLRNVPVGGSSRKNKRLS 137
                          6899******************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-2676128IPR003851Zinc finger, Dof-type
PfamPF027012.8E-3379135IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.87381135IPR003851Zinc finger, Dof-type
PROSITE patternPS01361083119IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDATKWTQGF QEMMNIKPMD QIMIPNNNNT HQSTTTSSAR PSTILTPNGV SAAGATVSSV  60
SNNNNNTAVV VERKARPQEK LNCPRCNSTN TKFCYYNNYS LTQPRYFCKG CRRYWTEGGT  120
LRNVPVGGSS RKNKRLSSSS SSSNILQTTP SSLGLTTTLP DLNPPILFSN QIPNKSIGSS  180
QDLNLLSFPV MQDQHHRVHM SQFLHMPKME GNGNITHQQP SSSSSLYGSS PVSALELLRR  240
GVSVSPNSVM PSGPMMDSSN NVMYTSSGFP TMVDYKPSNL SFSTDHHQGT GHNNHNRSDD  300
AHHQGRVLFP FGDQMKELSS SITQEVDHDD NQQQKSHGNN NNNISSSPNN GYWSGMFSTT  360
GGGSSW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.144940.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00073166001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528590.0AK352859.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-N20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142625.10.0PREDICTED: dof zinc finger protein DOF2.5-like
RefseqXP_013747624.10.0PREDICTED: dof zinc finger protein DOF2.5-like
SwissprotQ9ZPY00.0DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBLA0A078HW100.0A0A078HW10_BRANA; BnaC04g00830D protein
STRINGBra004525.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25282673
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46590.21e-139Dof family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]